miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|240353950|gb|GR355923.1|GR355923 ACGAAACGATGACTTTGTTACCATGTTGTTAACATTACAGCAAGACCGAAGTACTCGCATACAGTTAACAGGTTCAAACA
TCGTGACACCACCCAAAGAGGAGCATGACAGAACAGAAAAACTGAAGTTTTATGTCTACTGATTTCACAGAGGCAATGAT
GGCTTGAGCCCTAGTTCTTGATCTTCTTCTTGGGCCTCAGCTGATTGCTGTGGCCACATTTCTTCTTGCGGCAGTTGACA
GCCCTTGGGTGCAGGCGTGCATAGCACTTGCGGCAGATCATCTTCTCCTGGTTGTACTTGCGAGCGAGGGCCTGGAGCGA
GGGCTCGATGATGCCTCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGC
GGCCGTCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCC
TTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACG




Most similar to sp|P0CH35|RL40B_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P0CH35|RL40B_ORYSJ Ubiquitin-60S ribosomal protein L40-2
           OS=Oryza sativa subsp. japonica GN=Ub-CEP52-2 PE=3 SV=1
          Length = 129

 Score =  252 bits (643), Expect = 1e-66
 Identities = 124/125 (99%), Positives = 125/125 (100%)
 Frame = -2

Query: 548 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 369
           VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE
Sbjct: 5   VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64

Query: 368 STLHLVLRLRGGIIEPSLQALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQLRPK 189
           STLHLVLRLRGGIIEPSLQALARKYNQ+KMICRKCYARLHPRAVNCRKKKCGHSNQLRPK
Sbjct: 65  STLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPK 124

Query: 188 KKIKN 174
           KKIKN
Sbjct: 125 KKIKN 129